PlantTFDB
Plant Transcription Factor Database
v4.0
Previous version: v3.0
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Psi003697
Organism
Picea sitchensis
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Acrogymnospermae; Pinidae; Pinales; Pinaceae; Picea
Family NF-YC
Protein Properties Length: 252aa    MW: 28804.4 Da    PI: 7.1564
Description NF-YC family protein
Gene Model
Gene Model ID Type Source Coding Sequence
PUT-183a-Picea_sitchensis-1731478PU_refplantGDBView CDS
gnl|UG|Psi#S41649802PU_unrefUnigeneView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1NF-YC162.84.8e-51591641102
      NF-YC   1 qlksfwekq...iekatdfknhelPlarikkilkad.edvkmisaeaPvllskacelfileltlrswlhaeenkrrtlkksdiaaavtrtdifdflvdiv 96 
                q+++fw++q   ie+a df+nh+lPlarikki+k+d e+v+misaeaPv+++kace+fi eltlr+w+h+eenkrrtl+k+diaaa++rtdifdfl+div
  Psi003697  59 QIEVFWANQmqeIEQAVDFRNHSLPLARIKKIMKSDdENVRMISAEAPVVFAKACEMFINELTLRAWIHTEENKRRTLQKNDIAAAIARTDIFDFLIDIV 158
                6889****9878899*******************96267************************************************************* PP

      NF-YC  97 prdelk 102
                prdelk
  Psi003697 159 PRDELK 164
                ***975 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF471137.34E-3331154IPR009072Histone-fold
PfamPF008081.3E-2281145IPR003958Transcription factor CBF/NF-Y/archaeal histone domain
Gene3DG3DSA:1.10.20.105.8E-3782160IPR009072Histone-fold
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0005634Cellular Componentnucleus
GO:0046982Molecular Functionprotein heterodimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 252 aa     Download sequence    Send to blast
MPYPNTQIQP NIAAHGAFQQ PPIHAHHHAL SSHHNQLPYQ HQQQIHQHQR QLHHQQQQQI  60
EVFWANQMQE IEQAVDFRNH SLPLARIKKI MKSDDENVRM ISAEAPVVFA KACEMFINEL  120
TLRAWIHTEE NKRRTLQKND IAAAIARTDI FDFLIDIVPR DELKEDQVIN LGNPRSALSV  180
GSSSTNAAAG ANSFPYYYLP NQHSVPHGVF VGKPMDPTIY MQQPQSPVAY MPNIWQWGHM  240
QADQSKSPNP GS
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1n1j_B6e-4068160497NF-YC
4awl_C5e-4068160194NUCLEAR TRANSCRIPTION FACTOR Y SUBUNIT GAMMA
4csr_B5e-4068160194NUCLEAR TRANSCRIPTION FACTOR Y SUBUNIT GAMMA
Search in ModeBase
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1132138RRTLQKN
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_008346078.16e-75PREDICTED: nuclear transcription factor Y subunit C-2-like
RefseqXP_008346079.16e-75PREDICTED: nuclear transcription factor Y subunit C-2-like
RefseqXP_008356118.16e-75PREDICTED: nuclear transcription factor Y subunit C-2-like
RefseqXP_008356119.16e-75PREDICTED: nuclear transcription factor Y subunit C-2-like
RefseqXP_008372003.16e-75PREDICTED: nuclear transcription factor Y subunit C-2-like
SwissprotQ9FMV58e-66NFYC4_ARATH; Nuclear transcription factor Y subunit C-4
TrEMBLA9NTJ80.0A9NTJ8_PICSI; Putative uncharacterized protein
STRINGGLYMA08G17630.12e-71(Glycine max)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G56170.28e-64nuclear factor Y, subunit C2